Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4733

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13100 and 13101 are separated by 557 nucleotides13101 and 13102 are separated by 900 nucleotides mRNA_4732: 13100 - HMMPfam-Major intrinsic protein-PF00230,PRINTS-Major intrinsic protein family signature-PR00783,SUPERFAMILY--SSF81338, at 879,432 to 880,805 13100 mRNA_4733: 13101 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 881,363 to 882,284 13101 mRNA_4734: 13102 - Hypothetical Protein, at 883,185 to 884,845 13102

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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880,467 - 13100 mRNA_4732 0.75 -0.1
880,817 - +1.4
881,044 - -0.7
881,045 + +0.3
881,048 + +0.5
881,086 - +0.9
881,159 - +0.0
881,164 - +1.2
881,171 - -0.6
881,184 + +0.3
881,185 + +1.2
881,225 + -0.4
881,243 + +0.4
881,257 - -0.6
881,293 - -0.2
881,428 + -1.6
881,506 - 13101 mRNA_4733 0.16 -0.1
881,525 - 13101 mRNA_4733 0.18 -0.6
881,791 - 13101 mRNA_4733 0.46 -0.9
881,918 - 13101 mRNA_4733 0.60 +0.7
882,134 + 13101 mRNA_4733 0.84 +1.9
882,358 - -0.4
882,366 - +2.0
882,384 - +1.0
882,385 + +1.6
882,413 - +0.1
882,645 - -0.1
882,823 - +0.4
882,826 + -0.6
882,829 - +0.0
882,829 + -1.9
882,833 + +0.2
882,833 + -1.2
882,837 - -0.3
882,842 + -0.9
882,843 + -0.0
882,846 + +0.4
882,846 - +1.1
882,848 + +1.0
882,923 - -2.1
882,967 + -0.1
882,987 + -0.3
883,014 + +0.0
883,111 - +1.7
883,121 + -0.2
883,122 + +0.3
883,125 + +0.4
883,125 - +1.4
883,126 - +0.3
883,130 + +0.2

Or see this region's nucleotide sequence