Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4900

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13267 and 13268 are separated by 504 nucleotides13268 and 13269 are separated by 592 nucleotides mRNA_4899: 13267 - KOG4705 Uncharacterized conserved protein, at 1,256,310 to 1,257,849 13267 mRNA_4900: 13268 - HMMPfam-NADH-ubiquinone oxidoreductase B12 subunit family-PF08122, at 1,258,354 to 1,258,880 13268 mRNA_4901: 13269 - K03163 TOP1 DNA topoisomerase I, at 1,259,473 to 1,262,647 13269

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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1,257,435 - 13267 mRNA_4899 0.73 -0.2
1,257,582 - 13267 mRNA_4899 0.83 +0.2
1,257,584 + 13267 mRNA_4899 0.83 -1.7
1,257,730 - -2.8
1,257,861 - -0.5
1,257,874 - +0.3
1,257,880 - +0.8
1,257,881 - +2.3
1,257,888 + +0.7
1,257,894 - +0.1
1,257,899 - +0.4
1,257,899 - +0.7
1,257,902 + +0.2
1,257,902 + +0.5
1,257,902 + -2.3
1,257,904 - +1.1
1,258,203 - +0.0
1,258,208 + +0.3
1,258,215 - +0.3
1,258,219 - +0.2
1,258,234 + +0.1
1,258,328 + -3.3
1,258,854 - -0.6
1,258,916 - -0.1
1,258,923 + +1.4
1,258,955 - -0.0
1,258,961 + -1.7
1,259,074 - -3.8
1,259,085 - -0.7
1,259,096 + +0.4
1,259,101 - -0.0
1,259,117 + -0.7
1,259,133 + +0.3
1,259,259 + -0.9

Or see this region's nucleotide sequence