Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4925

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13292 and 13293 are separated by 286 nucleotides13293 and 13294 are separated by 87 nucleotides mRNA_4924: 13292 - KOG3012 Uncharacterized conserved protein, at 1,323,215 to 1,324,561 13292 mRNA_4925: 13293 - ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045, at 1,324,848 to 1,328,229 13293 mRNA_4926: 13294 - ProSiteProfiles-Chromo and chromo shadow domain profile.-PS50013, at 1,328,317 to 1,334,558 13294

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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1,323,923 - 13292 mRNA_4924 0.53 -1.8
1,324,200 - 13292 mRNA_4924 0.73 +0.8
1,324,764 + +1.1
1,324,786 - +0.7
1,324,812 + +0.2
1,325,224 - 13293 mRNA_4925 0.11 -0.4
1,325,385 - 13293 mRNA_4925 0.16 +1.6
1,325,644 + 13293 mRNA_4925 0.24 +0.5
1,326,104 + 13293 mRNA_4925 0.37 +1.9
1,326,108 + 13293 mRNA_4925 0.37 -0.8
1,326,399 + 13293 mRNA_4925 0.46 +2.2
1,326,916 - 13293 mRNA_4925 0.61 +1.1
1,328,381 + +1.3
1,328,395 + -1.0
1,328,446 + -1.0
1,328,474 - -0.4
1,328,474 - +1.5
1,328,606 - -0.2
1,328,700 - +0.6
1,328,750 - +0.1
1,328,752 - -0.0
1,328,772 + -1.0
1,328,773 + +1.0
1,328,806 + +0.0
1,328,810 + +0.3
1,328,811 - +0.3
1,328,847 + +1.1
1,328,851 - -1.1
1,328,900 + -0.7
1,328,922 + +1.2
1,328,927 + +0.4
1,328,960 - 13294 mRNA_4926 0.10 +0.6
1,328,973 - 13294 mRNA_4926 0.11 +0.6
1,328,988 + 13294 mRNA_4926 0.11 -1.4
1,329,029 - 13294 mRNA_4926 0.11 +1.7
1,329,049 - 13294 mRNA_4926 0.12 -1.4
1,329,056 + 13294 mRNA_4926 0.12 +0.4
1,329,062 + 13294 mRNA_4926 0.12 +0.1
1,329,070 - 13294 mRNA_4926 0.12 +2.4
1,329,074 - 13294 mRNA_4926 0.12 +2.1
1,329,093 + 13294 mRNA_4926 0.12 +0.4
1,329,095 + 13294 mRNA_4926 0.12 -0.2
1,329,143 - 13294 mRNA_4926 0.13 +0.1

Or see this region's nucleotide sequence