Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5025

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13392 and 13393 are separated by 433 nucleotides13393 and 13394 are separated by 186 nucleotides mRNA_5024: 13392 - K11124 SMG6, EST1A protein SMG6, at 1,575,656 to 1,580,280 13392 mRNA_5025: 13393 - BLAST HECT-type ubiquitin ligase-interacting protein creD [..., at 1,580,714 to 1,583,108 13393 mRNA_5026: 13394 - K01698 hemB, ALAD porphobilinogen synthase, at 1,583,295 to 1,584,679 13394

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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1,579,740 - 13392 mRNA_5024 0.88 +0.8
1,579,947 - -0.2
1,580,265 + +0.0
1,580,551 - -0.0
1,580,827 + -0.3
1,580,855 - +2.1
1,581,283 + 13393 mRNA_5025 0.24 -0.0
1,581,428 - 13393 mRNA_5025 0.30 -0.4
1,581,568 + 13393 mRNA_5025 0.36 -0.2
1,582,063 + 13393 mRNA_5025 0.56 +0.5
1,582,151 - 13393 mRNA_5025 0.60 -1.4
1,582,289 - 13393 mRNA_5025 0.66 +0.6
1,582,557 - 13393 mRNA_5025 0.77 +0.5
1,582,745 - 13393 mRNA_5025 0.85 -0.2
1,582,870 - -0.1
1,582,874 - +0.6
1,582,890 + +0.6
1,583,031 - +0.4
1,583,032 + -0.3
1,583,172 - +0.5
1,583,175 + -0.4
1,583,178 + +0.9

Or see this region's nucleotide sequence