Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5028

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13396 and 13397 are separated by 683 nucleotides mRNA_5028: 13396 - HMMPfam-Cryptococcal mannosyltransferase 1-PF11735, at 1,588,413 to 1,590,373 13396 mRNA_5029: 13397 - HMMPfam-Ornithine decarboxylase antizyme-PF02100,SUPERFAMILY--SSF55729, at 1,591,057 to 1,592,630 13397

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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1,587,453 - +0.2
1,587,486 - -0.7
1,587,487 + +1.7
1,587,601 - +1.8
1,587,648 + +0.0
1,587,754 - +0.8
1,587,779 + +0.2
1,587,901 - +0.6
1,587,915 + -0.1
1,587,923 - +0.1
1,587,940 + +1.1
1,588,061 + +2.0
1,588,092 - -2.0
1,588,209 + +2.0
1,588,210 + -0.5
1,588,225 + +1.7
1,588,225 + -0.8
1,588,365 + -0.5
1,588,365 - -0.4
1,588,522 - -0.2
1,588,523 + -0.4
1,588,554 - +2.1
1,588,557 + +0.7
1,588,707 - 13396 mRNA_5028 0.15 +0.1
1,588,816 - 13396 mRNA_5028 0.21 +1.1
1,588,822 - 13396 mRNA_5028 0.21 -0.1
1,588,983 + 13396 mRNA_5028 0.29 -0.5
1,589,251 - 13396 mRNA_5028 0.43 +1.6
1,590,185 + +0.2
1,590,630 - -1.0
1,590,767 - +1.3
1,590,958 - -0.7
1,591,216 + 13397 mRNA_5029 0.10 +0.4

Or see this region's nucleotide sequence