Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5168

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13536 and 13537 are separated by 234 nucleotides mRNA_5168: 13536 - SUPERFAMILY--SSF46955, at 60,934 to 62,324 13536 mRNA_5169: 13537 - Hypothetical Protein, at 62,559 to 64,260 13537

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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59,955 - +0.9
60,199 - +1.5
60,240 + -2.1
60,250 - -2.1
60,289 + +0.6
60,727 - +0.2
60,728 - +0.2
60,882 + +1.4
60,914 + +0.3
61,049 + -1.1
61,211 + 13536 mRNA_5168 0.20 -0.5
61,440 - 13536 mRNA_5168 0.36 -1.1
61,446 + 13536 mRNA_5168 0.37 -0.6
61,650 + 13536 mRNA_5168 0.51 +0.6
61,749 + 13536 mRNA_5168 0.59 +1.5
62,410 - +1.3
62,514 + +0.3
62,816 + 13537 mRNA_5169 0.15 +1.5
62,855 - 13537 mRNA_5169 0.17 +0.7
62,930 + 13537 mRNA_5169 0.22 +1.3
62,996 + 13537 mRNA_5169 0.26 -1.4
63,132 + 13537 mRNA_5169 0.34 +0.7
63,254 - 13537 mRNA_5169 0.41 -1.1

Or see this region's nucleotide sequence