Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5175

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13542 and 13543 are separated by 292 nucleotides13543 and 13544 are separated by 902 nucleotides mRNA_5174: 13542 - Hypothetical Protein, at 77,954 to 78,191 13542 mRNA_5175: 13543 - K08341 GABARAP, ATG8, LC3 GABA(A) receptor-associated protein, at 78,484 to 79,264 13543 mRNA_5176: 13544 - Hypothetical Protein, at 80,167 to 80,892 13544

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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77,683 - +1.5
77,836 + +1.4
77,995 - 13542 mRNA_5174 0.17 +1.5
78,115 + 13542 mRNA_5174 0.68 +0.2
78,260 + +0.0
78,273 + +2.0
78,307 - -0.2
78,385 - -0.5
78,395 + +0.5
78,403 - +0.8
78,408 - +1.0
78,421 + -0.7
78,586 + 13543 mRNA_5175 0.13 -0.7
78,720 - 13543 mRNA_5175 0.30 +0.9
78,738 + 13543 mRNA_5175 0.33 +0.6
78,878 + 13543 mRNA_5175 0.50 +0.5
79,166 - 13543 mRNA_5175 0.87 +2.2
79,200 - +0.5
79,314 - +0.4
79,426 - -0.1
79,587 - +0.8
79,703 + +0.8
79,758 + -0.3
79,882 - -1.3
79,999 + -0.3
80,229 + -0.0

Or see this region's nucleotide sequence