Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5263

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13630 and 13631 are separated by 465 nucleotides13631 and 13632 are separated by 563 nucleotides mRNA_5262: 13630 - K00161 PDHA, pdhA pyruvate dehydrogenase E1 component alpha subunit, at 306,876 to 308,801 13630 mRNA_5263: 13631 - BLAST pyruvate dehydrogenase E1 component subunit alpha [Mi..., at 309,267 to 309,581 13631 mRNA_5264: 13632 - Hypothetical Protein, at 310,145 to 311,167 13632

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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308,859 - +0.4
308,863 - +0.6
308,870 + +0.0
308,870 + +0.5
308,883 + -1.0
309,135 + +1.2
309,159 - +0.1
309,174 - +1.2
309,201 + -1.6
309,298 - +0.3
309,311 - 13631 mRNA_5263 0.14 +0.1
309,440 - 13631 mRNA_5263 0.55 +0.0
309,452 + 13631 mRNA_5263 0.59 +0.2
309,462 - 13631 mRNA_5263 0.62 +0.4
309,768 + -0.5
309,782 + +0.0
309,784 - +0.7
309,855 + -0.1
309,855 - +0.8
309,875 + -0.9
309,881 - +1.6
309,885 - +0.0
309,909 + -0.4
309,920 - +0.5
309,923 - +0.5
309,935 - -0.8
309,948 + +0.1
310,064 - +0.9
310,065 - +1.3
310,072 - -1.7
310,078 + +2.0
310,090 - +0.6
310,218 - -0.9
310,360 - 13632 mRNA_5264 0.21 +0.3
310,392 + 13632 mRNA_5264 0.24 +1.7
310,393 - 13632 mRNA_5264 0.24 -0.4

Or see this region's nucleotide sequence