Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5388

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13756 and 13757 are separated by 150 nucleotides mRNA_5388: 13756 - K02931 RP-L5, MRPL5, rplE large subunit ribosomal protein L5, at 628,120 to 629,112 13756 mRNA_5389: 13757 - KOG0750 Mitochondrial solute carrier protein, at 629,263 to 631,005 13757

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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627,147 - -0.7
627,229 - -0.8
627,235 + +0.6
627,249 + +0.7
627,256 + +1.2
627,325 - +0.3
627,560 + +0.8
627,623 - +0.4
627,643 + +1.7
627,663 + +1.1
627,671 - +1.5
627,776 + +0.3
627,852 + +0.9
627,964 - -1.4
627,980 - +1.2
628,028 - -0.7
629,132 - +2.3
629,133 - +1.9
629,140 - +0.4
629,167 + -0.2
629,168 + +0.6
629,181 + +0.4
629,181 + +0.5
629,270 - +0.1
629,291 - -0.5
629,294 - +0.2
629,294 - +1.5
629,305 + +0.2
629,308 - +0.7
629,311 + -0.6
629,319 - +0.7
629,320 + +0.7
629,322 + +1.6
629,322 - +1.2
629,336 + -1.0
629,341 - +0.3
629,362 + -0.5
629,367 - +2.2
629,460 - 13757 mRNA_5389 0.11 +1.3
629,515 + 13757 mRNA_5389 0.14 +0.8
629,607 - 13757 mRNA_5389 0.20 -3.5
629,621 - 13757 mRNA_5389 0.21 +0.5
629,628 - 13757 mRNA_5389 0.21 +1.2
629,758 - 13757 mRNA_5389 0.28 +0.6
629,762 + 13757 mRNA_5389 0.29 +0.9
629,900 - 13757 mRNA_5389 0.37 -0.4
629,918 + 13757 mRNA_5389 0.38 -1.4
630,046 - 13757 mRNA_5389 0.45 -0.5

Or see this region's nucleotide sequence