Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5544

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13911 and 13912 are separated by 640 nucleotides mRNA_5543: 13911 - K15190 MEPCE, BCDIN3 7SK snRNA methylphosphate capping enzyme, at 338,637 to 339,590 13911 mRNA_5544: 13912 - Hypothetical Protein, at 340,231 to 341,133 13912

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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339,629 - +2.3
339,636 - +0.7
339,650 + +0.4
339,677 + +0.9
339,765 - -2.5
339,786 + +0.7
339,796 - -1.1
339,802 + +0.6
339,806 + +0.6
339,815 + +0.3
339,871 - +0.7
339,878 + +2.4
339,897 + +0.2
339,963 - -0.5
339,975 + +1.0
339,986 + -0.4
340,003 + +1.1
340,003 - +0.9
340,084 - +0.6
340,125 - +1.1
340,233 + -0.4
340,234 - -0.4
340,236 + +2.5
340,243 - +0.5
340,380 + 13912 mRNA_5544 0.17 -1.2
340,528 + 13912 mRNA_5544 0.33 +1.5
340,551 + 13912 mRNA_5544 0.35 -0.3
340,774 + 13912 mRNA_5544 0.60 +0.2
340,814 - 13912 mRNA_5544 0.65 +0.9
340,964 - 13912 mRNA_5544 0.81 -0.0
341,146 + +0.6
341,250 - +0.8
341,264 - +0.5
341,284 + -0.6
341,549 - +0.2
341,616 - +1.1
341,642 - -1.4
341,697 + +1.9
341,698 - -0.7
341,724 + -0.5
341,732 - +0.8
341,742 + +0.1
341,856 + +0.9
341,859 + -0.8
342,057 - +0.8
342,087 - +2.0

Or see this region's nucleotide sequence