Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5974

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14340 and 14341 are separated by 131 nucleotides14341 and 14342 overlap by 4 nucleotides14342 and 14343 are separated by 492 nucleotides mRNA_5972: 14340 - K03243 EIF5B translation initiation factor 5B, at 1,355,069 to 1,359,492 14340 mRNA_5973: 14341 - Hypothetical Protein, at 1,359,624 to 1,360,109 14341 mRNA_5974: 14342 - SUPERFAMILY--SSF54909, at 1,360,106 to 1,360,539 14342 mRNA_5975: 14343 - K14636 SLC18A3, VACHT MFS transporter, DHA1 family, solute carrier family 18 (vesicular acetylcholine transporter), member 3, at 1,361,032 to 1,363,169 14343

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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1,360,023 + 14341 mRNA_5973 0.82 +0.6
1,360,421 - 14342 mRNA_5974 0.73 +0.2
1,360,444 - 14342 mRNA_5974 0.78 -1.1
1,360,456 + 14342 mRNA_5974 0.81 +0.3
1,360,469 - 14342 mRNA_5974 0.84 +0.2
1,360,478 + 14342 mRNA_5974 0.86 +1.2
1,360,596 + -0.4
1,360,598 + -0.1
1,360,601 - -1.2
1,360,612 + +0.6
1,360,625 - -0.6
1,360,631 + -0.9
1,360,631 + -0.5
1,360,633 + +0.4
1,360,634 + -0.1
1,360,639 - -1.2
1,360,645 - -1.4
1,360,649 + +0.5
1,360,650 + +1.5
1,360,778 - +0.1
1,360,780 - -1.2
1,360,785 - -1.9
1,360,797 - +0.6
1,360,799 + -1.0
1,360,812 + +1.2
1,360,821 - -1.0
1,360,822 + +1.5
1,360,831 - +1.2
1,360,833 - +0.2
1,360,964 - -0.4
1,361,016 - -2.7
1,361,096 + +0.6
1,361,099 - -0.1
1,361,132 + +1.7
1,361,404 - 14343 mRNA_5975 0.17 +0.6
1,361,413 - 14343 mRNA_5975 0.18 +0.7
1,361,415 + 14343 mRNA_5975 0.18 +0.8
1,361,525 - 14343 mRNA_5975 0.23 +1.7

Or see this region's nucleotide sequence