Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6232

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14599 and 14600 are separated by 231 nucleotides14600 and 14601 are separated by 516 nucleotides mRNA_6231: 14599 - KOG2358 NifU-like domain-containing proteins, at 307,619 to 308,722 14599 mRNA_6232: 14600 - K17450 ACO2 homoaconitase, at 308,954 to 311,929 14600 mRNA_6233: 14601 - K16945 CDC11 cell division control protein 11, at 312,446 to 314,280 14601

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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308,574 + 14599 mRNA_6231 0.87 +1.4
308,591 - 14599 mRNA_6231 0.88 -2.5
308,605 + 14599 mRNA_6231 0.89 -0.1
308,732 - +0.4
308,733 + +0.4
308,737 - +1.5
308,825 - +0.3
308,828 - -0.3
308,840 + +2.3
308,860 + -0.4
308,870 + +2.4
308,911 + +1.3
309,032 - -0.3
309,040 + +0.9
309,043 + -0.2
309,046 - +1.0
309,075 + +0.4
309,192 - -1.0
309,201 + +1.2
309,213 + -0.6
309,383 - 14600 mRNA_6232 0.14 +2.0
309,511 - 14600 mRNA_6232 0.19 +1.1
309,633 + 14600 mRNA_6232 0.23 +0.6
310,086 - 14600 mRNA_6232 0.38 -0.2
310,141 - 14600 mRNA_6232 0.40 -0.8
310,227 - 14600 mRNA_6232 0.43 -2.7
311,213 + 14600 mRNA_6232 0.76 -1.2
311,694 - +0.2
311,982 - +2.9
312,135 + +0.9
312,145 + +2.0
312,149 + +0.3
312,255 - +0.9
312,276 + +0.4
312,299 + +0.1
312,451 - +1.7
312,593 - -0.4
312,745 - 14601 mRNA_6233 0.16 +0.2
312,858 - 14601 mRNA_6233 0.22 +0.5

Or see this region's nucleotide sequence