Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6261

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14629 and 14630 are separated by 464 nucleotides mRNA_6261: 14629 - K09274 K09274 HMG box factor, other, at 383,014 to 384,624 14629 mRNA_6262: 14630 - SMART-Gelsolin homology domain-SM00262,SUPERFAMILY--SSF55753, at 385,089 to 388,417 14630

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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382,089 + -0.5
382,089 + -0.2
382,104 + -0.2
382,110 - -0.1
382,132 + +1.0
382,143 - -1.2
382,189 - -0.7
382,195 - +0.4
382,212 + -0.1
382,220 + +0.2
382,238 - -1.3
382,240 - +0.2
382,249 + -1.7
382,254 - -0.3
382,264 - -2.1
382,289 - -0.7
382,293 - -0.4
382,307 + +0.2
382,324 + -0.1
382,332 + +1.9
382,340 + -0.3
382,345 + +0.8
382,349 - -0.3
382,360 + -0.1
382,363 + +0.3
382,365 + +0.7
382,369 + -1.4
382,370 - +2.2
382,370 - +0.3
382,375 + -1.6
382,381 + +1.3
382,418 - +0.7
382,423 + -0.7
382,433 + +1.9
382,434 - -0.4
382,436 + -1.9
382,436 - -0.8
382,436 - +2.5
382,437 - +0.2
382,448 - -1.0
382,449 + -0.8
382,451 + +0.6
382,471 - -0.0
382,503 + -0.7
382,516 + -0.7
382,529 - +0.5
382,531 + -0.0
382,531 + -0.1
382,535 + +0.7
382,542 + +0.2
382,543 - +0.1
382,546 - -0.4
382,549 - +0.5
382,550 - +0.8
382,556 + -0.2
382,566 - -0.1
382,570 - +1.1
382,571 - +1.0
382,573 - +1.1
382,575 - +0.7
382,583 - +0.7
382,583 - +0.8
382,586 + +0.7
382,586 + -1.2
382,587 + -0.5
382,588 - +1.1
382,588 - -0.3
382,590 - -1.1
382,592 - +0.0
382,594 + -0.7
382,603 + +0.7
382,652 - +1.6
382,663 - +0.3
382,691 - +1.4
382,695 + +1.5
382,700 + +0.4
382,707 - +1.8
382,713 - +1.5
382,724 + +1.3
382,726 + +0.5
382,732 + +1.2
382,866 - -0.1
382,884 + +0.8
383,004 - +1.9
383,005 + +1.6
383,014 - +0.9
383,016 + -0.0
383,158 - +0.8
383,166 + -0.6
383,738 - 14629 mRNA_6261 0.45 +0.4
383,822 + 14629 mRNA_6261 0.50 +0.3
383,893 - 14629 mRNA_6261 0.55 +0.1
383,903 + 14629 mRNA_6261 0.55 +0.6
384,042 - 14629 mRNA_6261 0.64 +1.8
384,044 + 14629 mRNA_6261 0.64 -1.0
384,045 - 14629 mRNA_6261 0.64 +0.2
384,188 + 14629 mRNA_6261 0.73 -0.9
384,494 - +0.4
384,502 - +0.4
384,654 - +0.4
384,686 - -1.6
384,779 - +1.4
384,801 - -2.7
384,803 - +0.5
384,812 + +1.8
384,823 - +0.5
384,848 - +0.2
384,850 - +2.6
384,867 + -1.1
384,877 - -1.2
384,883 - +2.4
384,893 - -2.2
384,894 - +0.3
384,897 + +0.2
384,897 + -1.7
384,899 + +0.9
384,900 + -0.3
384,905 - +0.1
384,933 + -0.0
384,934 - +0.1
384,934 - +0.1
384,939 + +0.2
384,940 - +0.3
384,940 - -0.0
384,946 + +0.9
384,955 + -0.0
384,964 - +1.6
384,976 + +1.0
384,983 - +0.9
384,993 - +1.0
385,074 - +0.2
385,079 - +0.3
385,080 + +0.1
385,087 - +2.7
385,091 + +0.4
385,092 - -0.6
385,186 + +0.5
385,217 + -0.7
385,257 - +1.0
385,276 + +1.6
385,297 - +0.0
385,329 - +3.2
385,332 + +0.0
385,363 - +0.4
385,389 - -2.0
385,394 - +0.2
385,401 - +1.0
385,558 + 14630 mRNA_6262 0.14 +1.1

Or see this region's nucleotide sequence