Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6395

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14762 and 14763 are separated by 308 nucleotides14763 and 14764 are separated by 690 nucleotides mRNA_6394: 14762 - HMMPfam-Asparagine synthase-PF00733,SUPERFAMILY--SSF52402,SUPERFAMILY--SSF56235, at 710,467 to 712,891 14762 mRNA_6395: 14763 - K19403 MCPH1 microcephalin, at 713,200 to 716,170 14763 mRNA_6396: 14764 - Hypothetical Protein, at 716,861 to 718,717 14764

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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712,256 + 14762 mRNA_6394 0.74 +0.8
712,460 - 14762 mRNA_6394 0.82 +0.7
712,541 - 14762 mRNA_6394 0.86 -2.0
712,636 - 14762 mRNA_6394 0.89 +0.5
712,637 + 14762 mRNA_6394 0.89 +2.0
713,267 + -0.2
713,285 - +0.4
713,286 + +1.1
713,428 - -0.5
713,502 + 14763 mRNA_6395 0.10 -0.1
713,704 - 14763 mRNA_6395 0.17 -0.5
713,704 - 14763 mRNA_6395 0.17 -0.8
713,710 + 14763 mRNA_6395 0.17 -1.5
713,800 - 14763 mRNA_6395 0.20 -2.1
714,278 - 14763 mRNA_6395 0.36 +0.2
714,444 + 14763 mRNA_6395 0.42 -0.4
714,522 - 14763 mRNA_6395 0.44 +1.6
714,579 + 14763 mRNA_6395 0.46 +0.9
714,737 + 14763 mRNA_6395 0.52 +1.9
715,443 + 14763 mRNA_6395 0.75 +1.4
715,566 - 14763 mRNA_6395 0.80 +0.6
715,834 - 14763 mRNA_6395 0.89 +0.6
715,875 + -0.2
715,882 - +1.1
716,019 + -0.1
716,020 - +1.4
716,308 - -0.5
716,328 - +1.9
716,347 - +0.3
716,356 - +0.2
716,396 - -1.1
716,456 + -0.4
716,479 + +1.2
716,517 + -0.2
717,077 + 14764 mRNA_6396 0.12 +0.0

Or see this region's nucleotide sequence