Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6514

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14881 and 14882 are separated by 968 nucleotides14882 and 14883 are separated by 149 nucleotides mRNA_6513: 14881 - HMMPfam-Glycosyl transferase family 90-PF05686,SMART-Putative lipopolysaccharide-modifying enzyme.-SM00672, at 964,907 to 967,353 14881 mRNA_6514: 14882 - KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter, at 968,322 to 969,938 14882 mRNA_6515: 14883 - K16578 CLASP1_2 CLIP-associating protein 1/2, at 970,088 to 973,817 14883

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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967,376 - +0.3
967,386 + +0.6
967,391 - +0.6
967,400 - -0.2
967,415 - +0.5
967,534 - +0.1
967,544 - -1.0
967,544 - -0.8
967,546 - -0.1
967,558 - +0.1
967,569 - +1.3
967,602 + +0.5
967,700 + -0.8
967,705 + +0.5
967,712 - +2.0
967,839 + +1.8
967,979 - -1.9
968,019 + +1.5
968,125 + +0.8
968,270 - +2.1
968,278 - +0.8
968,280 + -0.3
968,421 - +0.5
968,453 + +0.5
968,700 - 14882 mRNA_6514 0.23 -0.1
968,912 - 14882 mRNA_6514 0.36 +0.2
968,924 - 14882 mRNA_6514 0.37 +1.6
969,313 + 14882 mRNA_6514 0.61 -0.4
969,484 - 14882 mRNA_6514 0.72 +0.3
969,658 + 14882 mRNA_6514 0.83 -0.1
969,767 + 14882 mRNA_6514 0.89 +1.4
969,780 + +1.5
970,112 + -0.1
970,376 - +0.5
970,829 + 14883 mRNA_6515 0.20 -1.5

Or see this region's nucleotide sequence