Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6735

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15102 and 15103 are separated by 312 nucleotides15103 and 15104 are separated by 166 nucleotides mRNA_6734: 15102 - Hypothetical Protein, at 21,925 to 24,629 15102 mRNA_6735: 15103 - Hypothetical Protein, at 24,942 to 26,366 15103 mRNA_6736: 15104 - K11527 K11527 two-component system, sensor histidine kinase and response regulator, at 26,533 to 28,608 15104

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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23,952 - 15102 mRNA_6734 0.75 +0.9
24,244 + 15102 mRNA_6734 0.86 -0.3
24,266 - 15102 mRNA_6734 0.87 -1.3
24,529 - +0.1
24,538 + +0.7
24,673 - -0.5
24,701 - -0.1
24,701 - +0.9
24,702 + -0.5
24,709 - +0.4
24,722 - +0.8
24,746 - +1.2
24,749 - -0.1
24,799 - +0.2
24,825 - +1.6
24,826 + +0.5
24,852 - +3.4
24,855 - +0.6
24,894 - +0.5
24,908 - +0.3
24,984 + +0.8
24,994 + +0.1
25,126 - 15103 mRNA_6735 0.13 +0.3
25,144 - 15103 mRNA_6735 0.14 +0.8
25,146 - 15103 mRNA_6735 0.14 -1.3
25,148 - 15103 mRNA_6735 0.14 +0.5
25,209 + 15103 mRNA_6735 0.19 +0.9
25,286 - 15103 mRNA_6735 0.24 +1.0
25,297 + 15103 mRNA_6735 0.25 +0.3
25,313 - 15103 mRNA_6735 0.26 -1.6
25,428 - 15103 mRNA_6735 0.34 -0.0
25,445 - 15103 mRNA_6735 0.35 +1.0
25,468 + 15103 mRNA_6735 0.37 +0.8
25,636 + 15103 mRNA_6735 0.49 +1.2
25,745 - 15103 mRNA_6735 0.56 +1.8
25,750 + 15103 mRNA_6735 0.57 +0.0
25,864 + 15103 mRNA_6735 0.65 -0.5
25,871 - 15103 mRNA_6735 0.65 -0.4
25,912 + 15103 mRNA_6735 0.68 -0.0
26,056 + 15103 mRNA_6735 0.78 +1.1
26,301 + +2.3
26,330 + -0.6
26,504 + +2.1
26,531 + +0.1
26,534 - -0.2
26,588 - -0.3
26,629 + +0.3
26,646 + +0.3
26,751 - 15104 mRNA_6736 0.11 -0.2
26,781 - 15104 mRNA_6736 0.12 -0.2
26,927 - 15104 mRNA_6736 0.19 -0.3
27,128 + 15104 mRNA_6736 0.29 +0.5

Or see this region's nucleotide sequence