Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6879

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15247 and 15248 are separated by 918 nucleotides mRNA_6879: 15247 - KOG0293 WD40 repeat-containing protein, at 339,326 to 341,674 15247 mRNA_6880: 15248 - K00641 metX homoserine O-acetyltransferase, at 342,593 to 344,205 15248

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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338,375 - +1.7
338,453 - -0.1
338,617 - -0.7
338,641 - +0.6
338,654 - -1.0
338,971 - -0.7
339,224 + +1.2
339,566 + 15247 mRNA_6879 0.10 +0.0
339,674 + 15247 mRNA_6879 0.15 +0.2
339,816 - 15247 mRNA_6879 0.21 +0.9
340,179 - 15247 mRNA_6879 0.36 +0.2
340,301 - 15247 mRNA_6879 0.42 -2.0
340,412 - 15247 mRNA_6879 0.46 +0.0
340,830 - 15247 mRNA_6879 0.64 -0.2
341,164 - 15247 mRNA_6879 0.78 +0.8
341,289 + 15247 mRNA_6879 0.84 +0.2
341,413 - 15247 mRNA_6879 0.89 -0.2
341,444 + -0.2
341,596 + -0.4
341,607 - +1.0
341,730 - -0.2
341,741 + -0.9
341,752 - +0.2
341,756 + +0.8
341,904 + -0.6
342,053 + -1.2
342,058 + -0.9
342,188 - -0.0
342,188 - +1.3
342,195 + -0.7
342,198 - -0.8
342,211 + -0.2
342,233 + -1.3
342,347 + +1.7
342,347 + +0.2
342,357 - -0.2
342,361 - +0.8
342,371 + +1.7
342,508 - -0.4
342,533 + +1.1
342,636 - +1.8
342,660 + +1.9

Or see this region's nucleotide sequence