Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7262

Experiment: Dropout Complete

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15629 and 15630 are separated by 647 nucleotides15630 and 15631 are separated by 573 nucleotides mRNA_7261: 15629 - SUPERFAMILY--SSF51735, at 1,246,601 to 1,248,053 15629 mRNA_7262: 15630 - HMMPfam-Peptidase M50B-like-PF13398, at 1,248,701 to 1,250,915 15630 mRNA_7263: 15631 - K00615 E2.2.1.1, tktA, tktB transketolase, at 1,251,489 to 1,254,335 15631

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
remove
1,247,803 - 15629 mRNA_7261 0.83 -1.1
1,247,848 + 15629 mRNA_7261 0.86 +0.4
1,248,100 - -0.8
1,248,105 - -0.1
1,248,111 + +0.5
1,248,120 + +0.3
1,248,121 + +0.9
1,248,122 - +0.4
1,248,123 + -1.1
1,248,128 - +0.8
1,248,130 - -0.3
1,248,130 + +0.1
1,248,130 + -0.2
1,248,139 - -1.6
1,248,150 + -0.3
1,248,152 + +0.1
1,248,152 + -0.3
1,248,161 + +1.2
1,248,418 + -0.0
1,248,421 + -1.6
1,248,438 + +0.1
1,248,439 - +0.6
1,248,454 - +2.3
1,248,720 - +0.8
1,248,720 - -0.4
1,248,851 + +0.8
1,248,921 - +0.5
1,249,027 + 15630 mRNA_7262 0.15 -0.5
1,249,058 - 15630 mRNA_7262 0.16 +0.6
1,249,077 + 15630 mRNA_7262 0.17 +0.6
1,249,173 - 15630 mRNA_7262 0.21 +0.4
1,249,479 - 15630 mRNA_7262 0.35 +1.3
1,250,016 + 15630 mRNA_7262 0.59 +0.2
1,250,116 + 15630 mRNA_7262 0.64 +1.0
1,250,181 + 15630 mRNA_7262 0.67 +0.1
1,250,211 - 15630 mRNA_7262 0.68 +0.2
1,250,218 + 15630 mRNA_7262 0.68 +0.2
1,250,337 - 15630 mRNA_7262 0.74 +0.3
1,250,340 - 15630 mRNA_7262 0.74 +0.6
1,250,360 + 15630 mRNA_7262 0.75 +0.1
1,250,437 + 15630 mRNA_7262 0.78 -0.1
1,250,601 + 15630 mRNA_7262 0.86 +1.5
1,250,692 + 15630 mRNA_7262 0.90 -0.3
1,250,692 - 15630 mRNA_7262 0.90 -1.3
1,250,773 - +0.6
1,250,805 + +0.9
1,250,817 + +1.9
1,250,904 - -0.4
1,250,913 - +1.2
1,250,920 + -0.2
1,250,941 + +1.4
1,250,948 + +0.3
1,250,950 + +1.5
1,250,988 - +1.2
1,251,240 - +0.9
1,251,244 - +1.7
1,251,252 - -0.1
1,251,255 - -1.8
1,251,269 - -0.4
1,251,277 + -1.9
1,251,278 - -1.8
1,251,278 + -0.3
1,251,296 - -0.2
1,251,387 - +0.8
1,251,397 - -0.3
1,251,413 - -0.4
1,251,417 - +0.7

Or see this region's nucleotide sequence