Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7320

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15688 and 15689 are separated by 410 nucleotides mRNA_7320: 15688 - BLAST genomic scaffold, msy-sf-7 protein, putative [Rhizoct..., at 106 to 1,532 15688 mRNA_7321: 15689 - KOG1339 Aspartyl protease, at 1,943 to 3,763 15689

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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14 + +0.4
14 + -3.6
14 + +1.3
14 + +1.4
22 + +0.1
29 + +0.2
35 + +1.2
45 + +0.7
66 + +0.6
68 + +0.9
71 - -2.3
105 + +0.2
120 - +1.1
120 + +0.2
121 - +0.8
122 - +1.5
126 + +2.0
126 + +0.3
131 - -2.9
135 - +1.7
135 + -1.1
135 + -0.4
135 + -0.6
135 - -0.9
142 - +0.4
148 + +0.1
153 + +0.5
159 - +0.0
159 - +0.3
161 + -0.7
168 - +1.1
195 + +0.5
233 + +0.8
263 + 15688 mRNA_7320 0.11 -0.7
267 - 15688 mRNA_7320 0.11 -2.1
301 - 15688 mRNA_7320 0.14 +0.8
310 - 15688 mRNA_7320 0.14 -0.1
313 + 15688 mRNA_7320 0.15 -1.4
313 + 15688 mRNA_7320 0.15 +0.4
319 + 15688 mRNA_7320 0.15 -0.0
322 - 15688 mRNA_7320 0.15 +0.8
340 - 15688 mRNA_7320 0.16 +0.5
345 + 15688 mRNA_7320 0.17 +0.4
357 + 15688 mRNA_7320 0.18 +0.7
359 + 15688 mRNA_7320 0.18 +0.4
365 - 15688 mRNA_7320 0.18 -0.2
401 - 15688 mRNA_7320 0.21 -0.5
401 - 15688 mRNA_7320 0.21 -0.4
401 + 15688 mRNA_7320 0.21 +0.0
405 + 15688 mRNA_7320 0.21 -1.6
415 + 15688 mRNA_7320 0.22 +0.6
428 - 15688 mRNA_7320 0.23 -0.1
461 - 15688 mRNA_7320 0.25 -0.8
462 + 15688 mRNA_7320 0.25 -0.1
466 - 15688 mRNA_7320 0.25 -0.6
482 + 15688 mRNA_7320 0.26 +0.5
488 - 15688 mRNA_7320 0.27 -2.2
573 - 15688 mRNA_7320 0.33 -0.2
594 - 15688 mRNA_7320 0.34 +1.4
595 + 15688 mRNA_7320 0.34 +0.2
595 + 15688 mRNA_7320 0.34 +0.6
625 - 15688 mRNA_7320 0.36 -0.2
644 + 15688 mRNA_7320 0.38 +0.8
644 + 15688 mRNA_7320 0.38 +2.2
648 + 15688 mRNA_7320 0.38 -0.5
654 - 15688 mRNA_7320 0.38 +1.7
654 + 15688 mRNA_7320 0.38 +2.0
713 + 15688 mRNA_7320 0.43 -1.1
753 - 15688 mRNA_7320 0.45 +0.1
756 - 15688 mRNA_7320 0.46 -0.8
763 + 15688 mRNA_7320 0.46 -0.2
765 + 15688 mRNA_7320 0.46 +0.6
778 + 15688 mRNA_7320 0.47 -0.5
811 - 15688 mRNA_7320 0.49 +0.7
921 + 15688 mRNA_7320 0.57 +1.4
945 + 15688 mRNA_7320 0.59 -0.1
1,059 + 15688 mRNA_7320 0.67 -0.4
1,167 + 15688 mRNA_7320 0.74 +2.2
1,174 + 15688 mRNA_7320 0.75 +1.1
1,182 - 15688 mRNA_7320 0.75 +0.2
1,196 + 15688 mRNA_7320 0.76 +2.8
1,218 + 15688 mRNA_7320 0.78 -0.3
1,258 + 15688 mRNA_7320 0.81 +0.4
1,326 - 15688 mRNA_7320 0.85 +0.4
1,360 + 15688 mRNA_7320 0.88 +0.4
1,366 + 15688 mRNA_7320 0.88 +0.4
1,497 - +1.0
1,518 + +0.4
1,582 + -0.6
1,666 - +1.9
1,675 + +0.6
1,789 - +0.3
1,907 + -0.5
1,929 + +2.9
1,948 + +0.9
2,105 - +0.3
2,297 - 15689 mRNA_7321 0.19 -0.0
2,508 - 15689 mRNA_7321 0.31 +1.1
2,521 + 15689 mRNA_7321 0.32 -1.0
2,526 + 15689 mRNA_7321 0.32 +1.3
2,529 - 15689 mRNA_7321 0.32 +1.1
2,529 - 15689 mRNA_7321 0.32 -0.1

Or see this region's nucleotide sequence