Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7394

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15761 and 15762 are separated by 952 nucleotides15762 and 15763 are separated by 238 nucleotides mRNA_7393: 15761 - HMMPfam-Velvet factor-PF11754, at 172,471 to 174,336 15761 mRNA_7394: 15762 - KOG0569 Permease of the major facilitator superfamily, at 175,289 to 177,598 15762 mRNA_7395: 15763 - HMMPfam-ER membrane protein SH3-PF08229,SMART-ER membrane protein SH3-SM00786, at 177,837 to 178,751 15763

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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174,408 - +0.9
174,445 + -0.1
174,446 + +1.1
174,569 - -0.3
174,579 - -0.6
174,582 - +0.2
174,584 - +0.2
174,593 + +1.0
174,597 - +0.5
174,601 + +2.5
174,606 - -0.6
174,618 - +1.0
174,622 + +0.7
174,622 + -0.2
174,634 + +0.9
174,636 + +0.8
174,639 - -1.0
174,652 - +0.8
174,662 - -0.1
174,707 + +0.7
174,713 + +0.1
174,730 - +1.2
174,747 - +1.6
174,749 - +0.9
174,812 + -1.3
174,815 + -0.2
174,826 + +0.3
174,852 + +0.5
174,852 + -0.0
174,853 - -0.9
174,861 - +0.4
174,866 - -0.5
174,877 + +0.1
174,888 - -0.4
174,889 - +0.7
174,893 + -0.1
174,893 - +2.5
174,898 + +0.3
174,907 + +0.4
174,911 - +1.7
174,912 - +0.2
174,912 - +2.5
174,914 + -1.3
174,919 + +1.5
174,927 + +0.1
174,939 + +1.0
174,942 + -0.0
175,026 - -1.9
175,055 + -0.7
175,071 - +1.7
175,077 - -0.2
175,079 - -0.0
175,215 - -0.8
175,222 + -1.4
176,181 - 15762 mRNA_7394 0.39 -0.2
176,316 - 15762 mRNA_7394 0.44 -0.1
176,329 - 15762 mRNA_7394 0.45 +0.1
176,638 + 15762 mRNA_7394 0.58 -1.9
176,772 - 15762 mRNA_7394 0.64 +1.2
176,779 - 15762 mRNA_7394 0.65 +1.4
177,069 - 15762 mRNA_7394 0.77 +2.6
177,099 + 15762 mRNA_7394 0.78 +0.1
177,251 + 15762 mRNA_7394 0.85 +0.7
177,360 + 15762 mRNA_7394 0.90 -0.3
177,474 - +0.8
177,488 - +0.1
177,648 - +0.5
177,664 + -0.1
177,665 + +0.5
177,777 - -0.5
177,820 - -0.0
178,204 - 15763 mRNA_7395 0.40 -0.1
178,263 + 15763 mRNA_7395 0.47 -0.8
178,401 + 15763 mRNA_7395 0.62 -0.9
178,421 + 15763 mRNA_7395 0.64 +0.3
178,545 + 15763 mRNA_7395 0.77 +1.8

Or see this region's nucleotide sequence