Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7424

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15791 and 15792 are separated by 384 nucleotides15792 and 15793 are separated by 17 nucleotides mRNA_7423: 15791 - K01568 PDC, pdc pyruvate decarboxylase, at 241,820 to 244,654 15791 mRNA_7424: 15792 - Hypothetical Protein, at 245,039 to 245,546 15792 mRNA_7425: 15793 - Hypothetical Protein, at 245,564 to 246,232 15793

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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244,167 - 15791 mRNA_7423 0.83 -0.7
244,300 - 15791 mRNA_7423 0.87 -0.5
244,346 - 15791 mRNA_7423 0.89 -0.9
244,425 - +0.9
244,429 - +0.2
244,441 + -1.2
244,446 + -0.2
244,472 + +1.8
244,482 + -1.0
244,494 - -0.9
244,536 - -0.3
244,537 + -1.3
244,539 + -0.4
244,574 + +0.2
244,588 - +3.4
244,601 - +1.1
244,616 + -0.4
244,619 - +1.4
244,637 - +0.8
244,669 + +0.6
244,687 + +1.6
244,792 - +0.2
244,793 - +1.1
244,794 + -0.1
244,807 + -0.7
244,811 - -0.4
244,833 - +1.6
244,949 + +0.9
244,951 - -0.9
244,959 + -0.8
244,959 - +1.3
245,229 + 15792 mRNA_7424 0.37 +3.4
245,398 - 15792 mRNA_7424 0.71 +1.1
245,711 + 15793 mRNA_7425 0.22 +2.5
245,812 + 15793 mRNA_7425 0.37 +0.1
245,813 - 15793 mRNA_7425 0.37 -0.0
246,267 + +0.5
246,270 + +0.5
246,282 + +1.0
246,427 + +1.4
246,428 + +1.1

Or see this region's nucleotide sequence