Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7535

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15902 and 15903 are separated by 141 nucleotides15903 and 15904 are separated by 231 nucleotides mRNA_7534: 15902 - K07304 msrA peptide-methionine (S)-S-oxide reductase, at 511,662 to 512,740 15902 mRNA_7535: 15903 - HMMPfam-Complex1_LYR-like-PF13232, at 512,882 to 513,517 15903 mRNA_7536: 15904 - KOG2216 Conserved coiled/coiled coil protein, at 513,749 to 514,681 15904

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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512,001 + 15902 mRNA_7534 0.31 +0.3
512,013 - 15902 mRNA_7534 0.33 -1.2
512,013 + 15902 mRNA_7534 0.33 -1.3
512,128 - 15902 mRNA_7534 0.43 -0.5
512,255 + 15902 mRNA_7534 0.55 -0.1
512,295 - 15902 mRNA_7534 0.59 +1.2
512,433 + 15902 mRNA_7534 0.71 +1.1
512,697 - +1.2
512,720 - -0.4
512,721 + -0.1
512,735 + -0.1
512,738 - -1.1
512,739 + -0.8
513,583 - +1.2
513,597 + +0.5
513,599 - -0.2
513,728 + +1.5
513,869 - 15904 mRNA_7536 0.13 +1.2
513,873 + 15904 mRNA_7536 0.13 +0.5
513,887 - 15904 mRNA_7536 0.15 +0.1
514,016 + 15904 mRNA_7536 0.29 -1.9

Or see this region's nucleotide sequence