Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7582

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15949 and 15950 are separated by 855 nucleotides15950 and 15951 are separated by 61 nucleotides mRNA_7581: 15949 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 611,690 to 614,027 15949 mRNA_7582: 15950 - KOG2534 DNA polymerase IV (family X), at 614,883 to 616,136 15950 mRNA_7583: 15951 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 616,198 to 617,544 15951

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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614,145 - +0.5
614,164 + +1.3
614,309 - +0.5
614,575 + -2.7
614,666 + -0.2
614,915 + -0.6
615,295 + 15950 mRNA_7582 0.33 +0.1
615,725 + 15950 mRNA_7582 0.67 +0.6
615,748 + 15950 mRNA_7582 0.69 +1.9
615,758 - 15950 mRNA_7582 0.70 -1.0
615,765 + 15950 mRNA_7582 0.70 +0.7
615,768 - 15950 mRNA_7582 0.71 -0.1
615,775 + 15950 mRNA_7582 0.71 +0.8
616,046 - +0.8
616,199 + +0.6
617,080 + 15951 mRNA_7583 0.65 +0.1

Or see this region's nucleotide sequence