Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7605

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15972 and 15973 are separated by 249 nucleotides15973 and 15974 are separated by 417 nucleotides mRNA_7604: 15972 - K09549 PFDN2 prefoldin subunit 2, at 661,569 to 662,288 15972 mRNA_7605: 15973 - K03941 NDUFS8 NADH dehydrogenase (ubiquinone) Fe-S protein 8, at 662,538 to 663,838 15973 mRNA_7606: 15974 - Hypothetical Protein, at 664,256 to 665,164 15974

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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661,574 - +0.1
661,614 + -0.8
662,161 - 15972 mRNA_7604 0.82 +0.8
662,288 - +0.6
662,307 - +0.3
662,309 + -0.9
662,323 + +0.8
662,325 - +1.2
662,332 + -0.4
662,440 - +1.1
662,446 + +0.0
662,453 - +0.4
662,458 - -0.1
662,460 + +1.5
662,463 + -0.5
662,479 + -0.4
662,483 + -0.6
663,911 - +0.8
663,915 + +1.7
664,042 - +2.3
664,061 + -0.2
664,073 - -0.6
664,351 + 15974 mRNA_7606 0.10 -0.7
664,363 - 15974 mRNA_7606 0.12 -0.1
664,494 + 15974 mRNA_7606 0.26 +0.9
664,497 + 15974 mRNA_7606 0.27 -0.0
664,795 - 15974 mRNA_7606 0.59 -1.0

Or see this region's nucleotide sequence