Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7704

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16071 and 16072 are separated by 286 nucleotides16072 and 16073 are separated by 181 nucleotides mRNA_7703: 16071 - KOG2996 Rho guanine nucleotide exchange factor VAV3, at 883,081 to 887,724 16071 mRNA_7704: 16072 - K02214 CDC7 cell division control protein 7, at 888,011 to 890,440 16072 mRNA_7705: 16073 - Hypothetical Protein, at 890,622 to 891,361 16073

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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887,354 - +0.3
887,683 + +0.5
887,696 + -1.0
887,947 - +0.4
887,950 - +1.3
887,957 - +0.8
887,959 + +0.4
887,959 + -0.6
890,437 + -0.1
890,454 - +0.1
890,481 + +1.6
890,524 - +1.3
890,610 + +0.5
890,631 + -4.2
890,709 - 16073 mRNA_7705 0.12 +0.9
890,747 - 16073 mRNA_7705 0.17 -0.1
890,883 - 16073 mRNA_7705 0.35 -0.0
890,885 - 16073 mRNA_7705 0.36 +0.4
890,994 + 16073 mRNA_7705 0.50 +1.8
891,011 - 16073 mRNA_7705 0.53 +0.0
891,225 - 16073 mRNA_7705 0.81 +1.2
891,270 + 16073 mRNA_7705 0.88 -0.9
891,276 - 16073 mRNA_7705 0.88 -1.9
891,434 + -0.1

Or see this region's nucleotide sequence