Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7960

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16327 and 16328 are separated by 244 nucleotides16328 and 16329 are separated by 199 nucleotides mRNA_7959: 16327 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 101,739 to 102,560 16327 mRNA_7960: 16328 - SUPERFAMILY--SSF144232, at 102,805 to 103,919 16328 mRNA_7961: 16329 - HMMPfam-Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family-PF10342, at 104,119 to 104,997 16329

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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101,834 + 16327 mRNA_7959 0.12 +0.2
101,905 + 16327 mRNA_7959 0.20 -1.0
101,907 - 16327 mRNA_7959 0.20 +1.4
102,169 - 16327 mRNA_7959 0.52 +0.1
102,349 - 16327 mRNA_7959 0.74 +0.6
102,457 + 16327 mRNA_7959 0.87 +1.0
102,497 - +1.4
102,660 - +0.2
102,661 + -0.2
102,739 + -0.1
102,745 + +0.4
102,748 - +0.4
102,748 - +1.1
102,752 + -0.2
102,776 + +1.6
102,956 + 16328 mRNA_7960 0.14 -1.4
103,021 - 16328 mRNA_7960 0.19 -0.2
103,060 + 16328 mRNA_7960 0.23 +0.8
103,094 + 16328 mRNA_7960 0.26 +0.6
103,249 + 16328 mRNA_7960 0.40 -1.0
103,249 + 16328 mRNA_7960 0.40 +0.9
103,297 + 16328 mRNA_7960 0.44 +1.2
103,300 + 16328 mRNA_7960 0.44 -0.5
103,303 + 16328 mRNA_7960 0.45 +0.2
103,326 - 16328 mRNA_7960 0.47 +0.5
103,759 + 16328 mRNA_7960 0.86 +1.9
103,808 + -0.3
103,816 - +0.0
103,945 - +1.2
103,951 + +0.6
103,951 + -1.0
103,976 + -1.1
104,044 + +0.4
104,204 - -0.8
104,257 + 16329 mRNA_7961 0.16 +0.2
104,537 + 16329 mRNA_7961 0.48 -1.1
104,710 + 16329 mRNA_7961 0.67 +2.1
104,817 - 16329 mRNA_7961 0.79 -0.5
104,839 - 16329 mRNA_7961 0.82 +1.7
104,902 + 16329 mRNA_7961 0.89 -0.6
104,918 - +0.3

Or see this region's nucleotide sequence