Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7963

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16330 and 16331 are separated by 257 nucleotides16331 and 16332 are separated by 423 nucleotides mRNA_7962: 16330 - K08967 mtnD, mtnZ, ADI1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, at 105,517 to 106,511 16330 mRNA_7963: 16331 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 106,769 to 107,651 16331 mRNA_7964: 16332 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 108,075 to 108,950 16332

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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105,788 - 16330 mRNA_7962 0.27 +0.7
105,793 + 16330 mRNA_7962 0.28 +0.4
105,964 + 16330 mRNA_7962 0.45 +1.5
105,967 - 16330 mRNA_7962 0.45 -1.2
105,980 + 16330 mRNA_7962 0.47 +0.2
106,118 + 16330 mRNA_7962 0.60 +0.0
106,124 - 16330 mRNA_7962 0.61 +0.8
106,160 + 16330 mRNA_7962 0.65 -1.2
106,166 - 16330 mRNA_7962 0.65 +0.2
106,279 + 16330 mRNA_7962 0.77 +1.2
106,282 - 16330 mRNA_7962 0.77 +0.3
106,564 + +0.9
106,567 - -0.7
106,574 + +0.9
106,576 - -0.6
106,610 + +0.1
106,660 + +0.3
106,767 + -1.0
106,769 - +0.9
106,862 - 16331 mRNA_7963 0.11 -0.6
107,061 + 16331 mRNA_7963 0.33 +0.5
107,263 + 16331 mRNA_7963 0.56 -0.2
107,420 + 16331 mRNA_7963 0.74 +0.7
107,430 + 16331 mRNA_7963 0.75 +0.6
107,451 - 16331 mRNA_7963 0.77 +1.2
107,467 + 16331 mRNA_7963 0.79 +1.0
107,604 + +2.5
107,618 - -0.3
107,635 + -1.3
107,886 + +0.6
107,910 - +0.9
107,916 + +0.3
108,012 - +0.3
108,015 - +0.5
108,019 - +1.2
108,178 + 16332 mRNA_7964 0.12 +0.9
108,345 - 16332 mRNA_7964 0.31 -0.8
108,370 + 16332 mRNA_7964 0.34 +0.7
108,552 + 16332 mRNA_7964 0.54 +0.5
108,585 - 16332 mRNA_7964 0.58 +0.4
108,623 + 16332 mRNA_7964 0.63 -0.0

Or see this region's nucleotide sequence