Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8024

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16391 and 16392 are separated by 165 nucleotides16392 and 16393 are separated by 486 nucleotides mRNA_8023: 16391 - HMMPfam-WD domain, G-beta repeat-PF00400,ProSitePatterns-Trp-Asp (WD) repeats signature.-PS00678,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 230,764 to 233,185 16391 mRNA_8024: 16392 - K02988 RP-S5, MRPS5, rpsE small subunit ribosomal protein S5, at 233,351 to 234,544 16392 mRNA_8025: 16393 - KOG0118 FOG RRM domain, at 235,031 to 239,261 16393

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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232,505 - 16391 mRNA_8023 0.72 +1.3
232,512 - 16391 mRNA_8023 0.72 +1.7
232,533 + 16391 mRNA_8023 0.73 +0.3
232,543 - 16391 mRNA_8023 0.73 +0.7
232,616 - 16391 mRNA_8023 0.76 +0.6
232,651 + 16391 mRNA_8023 0.78 -0.9
232,778 - 16391 mRNA_8023 0.83 +0.1
232,790 + 16391 mRNA_8023 0.84 -1.5
232,813 + 16391 mRNA_8023 0.85 -1.1
232,980 + +1.8
232,993 + +2.4
233,073 - +0.9
233,093 + +0.7
233,236 + +0.6
233,241 + +0.3
233,244 + -0.6
233,249 + -0.3
233,250 + -0.3
233,251 - +1.2
234,578 - +0.7
234,578 - -0.3
234,579 - +0.8
234,600 - +0.7
234,600 - +1.4
234,600 - +0.5
234,600 - +0.1
234,605 + +0.2
234,610 - +0.5
234,616 - -0.7
234,617 + +0.5
234,621 - +0.0
234,625 - +0.1
234,736 - +1.1
234,739 - +1.2
234,741 + -0.0
234,772 - -1.2
234,880 - +0.7
234,913 + -0.1
235,036 - +2.2
235,053 - -0.0
235,072 + -0.0
235,174 + +0.4
235,467 - 16393 mRNA_8025 0.10 +0.0
235,484 + 16393 mRNA_8025 0.11 -0.8
235,498 + 16393 mRNA_8025 0.11 -0.8

Or see this region's nucleotide sequence