Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8212

Experiment: Dropout Complete

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16579 and 16580 are separated by 205 nucleotides16580 and 16581 are separated by 137 nucleotides mRNA_8211: 16579 - K02894 RP-L23e, RPL23 large subunit ribosomal protein L23e, at 679,410 to 680,572 16579 mRNA_8212: 16580 - K17878 NNT1 nicotinamide N-methyltransferase, at 680,778 to 681,996 16580 mRNA_8213: 16581 - KOG1590 Uncharacterized conserved protein, at 682,134 to 683,094 16581

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
remove
680,895 - -1.5
680,900 - 16580 mRNA_8212 0.10 -0.4
680,931 + 16580 mRNA_8212 0.13 +1.0
681,180 - 16580 mRNA_8212 0.33 -2.0
681,482 - 16580 mRNA_8212 0.58 -0.5
681,514 + 16580 mRNA_8212 0.60 +0.5
681,782 - 16580 mRNA_8212 0.82 +0.6
681,808 - 16580 mRNA_8212 0.84 -0.7
681,812 + 16580 mRNA_8212 0.85 +1.5
681,931 - +0.7
681,934 - +1.6
681,942 - +0.6
682,066 - -1.3
682,067 - +0.5
682,074 - -1.3
682,080 + +0.7
682,085 - +0.7
682,085 + +1.0
682,087 - -1.0
682,109 + +1.5
682,230 - 16581 mRNA_8213 0.10 +1.1
682,230 - 16581 mRNA_8213 0.10 +0.4

Or see this region's nucleotide sequence