Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8284

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16651 and 16652 are separated by 408 nucleotides16652 and 16653 are separated by 493 nucleotides mRNA_8283: 16651 - HMMPfam-Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region-PF00645,PRINTS-Histone H5 signature-PR00624,ProSiteProfiles-Poly(ADP-ribose) polymerase zinc finger domain profile.-PS50064,SUPERFAMILY--SSF57716, at 837,568 to 839,019 16651 mRNA_8284: 16652 - K07023 K07023 putative hydrolases of HD superfamily, at 839,428 to 840,649 16652 mRNA_8285: 16653 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729, at 841,143 to 845,451 16653

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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838,633 - 16651 mRNA_8283 0.73 +0.3
838,689 - 16651 mRNA_8283 0.77 -0.4
838,704 - 16651 mRNA_8283 0.78 +0.6
838,990 + -0.8
839,000 + +2.1
839,147 + -1.7
839,167 + +2.6
839,183 - +1.2
839,317 + -1.3
839,434 - -0.2
839,447 - +2.2
839,454 - -0.3
839,456 - +1.3
839,543 - +1.9
839,584 - 16652 mRNA_8284 0.13 +1.7
839,725 + 16652 mRNA_8284 0.24 +1.2
839,921 - 16652 mRNA_8284 0.40 +0.3
840,449 + 16652 mRNA_8284 0.84 +0.5
840,625 - -0.1
840,633 - -1.1

Or see this region's nucleotide sequence