Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8298

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16665 and 16666 are separated by 313 nucleotides16666 and 16667 are separated by 627 nucleotides mRNA_8297: 16665 - Hypothetical Protein, at 877,127 to 877,627 16665 mRNA_8298: 16666 - K02858 ribB, RIB3 3,4-dihydroxy 2-butanone 4-phosphate synthase, at 877,941 to 878,924 16666 mRNA_8299: 16667 - Hypothetical Protein, at 879,552 to 881,168 16667

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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877,313 - 16665 mRNA_8297 0.37 +0.3
877,366 + 16665 mRNA_8297 0.48 +0.5
877,464 - 16665 mRNA_8297 0.67 +0.2
877,732 - -1.4
877,739 - -0.9
877,785 + +1.0
877,798 + -0.7
878,964 + +1.0
878,971 - -1.8
878,990 + +0.1
878,994 + +0.5
878,998 - +0.1
878,999 + +0.4
879,000 - -0.1
879,012 + +0.3
879,018 + -0.8
879,125 - +0.1
879,135 + +0.1
879,157 + +0.2
879,172 + +1.1
879,214 - +0.4
879,215 + +0.7
879,215 + +0.2
879,233 + -2.3
879,237 + +0.6
879,237 + -0.2
879,246 + +1.5
879,249 - +0.0
879,250 + +1.5
879,252 + +0.8
879,256 + -0.5
879,300 - -0.4
879,302 - +0.6
879,324 - +0.1
879,324 - -1.1
879,352 + +0.2
879,408 - -0.5
879,408 + -0.0
879,409 - +0.3
879,410 + +0.4
879,426 - -0.5
879,427 + +1.0
879,434 - +2.4
879,436 - +0.7
879,452 - -1.3
879,456 + +0.3
879,457 + +0.9
879,495 + -0.1
879,639 + +1.5
879,774 - 16667 mRNA_8299 0.14 +1.1
879,808 + 16667 mRNA_8299 0.16 +0.6

Or see this region's nucleotide sequence