Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_44

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8411 and 8412 are separated by 224 nucleotides8412 and 8413 are separated by 170 nucleotides mRNA_43: 8411 - K05609 UCHL3, YUH1 ubiquitin carboxyl-terminal hydrolase L3, at 104,762 to 105,972 8411 mRNA_44: 8412 - Hypothetical Protein, at 106,197 to 108,340 8412 mRNA_45: 8413 - SUPERFAMILY--SSF51445, at 108,511 to 110,701 8413

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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105,356 + 8411 mRNA_43 0.49 -0.5
105,361 + 8411 mRNA_43 0.49 -0.5
105,563 + 8411 mRNA_43 0.66 +0.0
105,676 - 8411 mRNA_43 0.75 -1.3
105,947 - -0.3
105,959 - -0.0
105,986 + +0.4
106,088 + +1.3
106,106 - +0.1
106,300 - +0.6
106,573 + 8412 mRNA_44 0.18 +2.1
106,593 - 8412 mRNA_44 0.18 +0.6
106,597 - 8412 mRNA_44 0.19 +2.0
106,652 + 8412 mRNA_44 0.21 +0.6
106,796 - 8412 mRNA_44 0.28 -2.2
107,709 + 8412 mRNA_44 0.71 +1.0
107,857 - 8412 mRNA_44 0.77 -1.0
108,138 - -0.2
108,418 - -0.6
108,987 - 8413 mRNA_45 0.22 +0.6

Or see this region's nucleotide sequence