Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_181

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8548 and 8549 are separated by 595 nucleotides8549 and 8550 are separated by 99 nucleotides mRNA_180: 8548 - K01647 CS, gltA citrate synthase, at 438,943 to 441,127 8548 mRNA_181: 8549 - K12870 ISY1 pre-mRNA-splicing factor ISY1, at 441,723 to 442,875 8549 mRNA_182: 8550 - K19828 MTG1 mitochondrial GTPase 1, at 442,975 to 444,845 8550

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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440,965 + +0.3
441,072 - +0.5
441,246 - -0.1
441,283 - +2.5
441,611 - -0.1
443,054 - +0.0
443,148 + +1.6
443,505 + 8550 mRNA_182 0.28 +1.1

Or see this region's nucleotide sequence