Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_230

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8597 and 8598 are separated by 351 nucleotides mRNA_229: 8597 - Hypothetical Protein, at 565,794 to 566,303 8597 mRNA_230: 8598 - K11254 H4 histone H4, at 566,655 to 568,496 8598

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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565,827 - -0.4
565,838 - +0.7
566,143 - 8597 mRNA_229 0.68 -0.2
566,150 - 8597 mRNA_229 0.70 -0.9
566,579 - -0.8
566,713 - +1.8
566,725 - -0.4
566,730 + -0.3
566,852 - 8598 mRNA_230 0.11 +0.5
566,861 - 8598 mRNA_230 0.11 +2.1
566,868 - 8598 mRNA_230 0.12 +1.4
566,877 + 8598 mRNA_230 0.12 +0.8
566,879 + 8598 mRNA_230 0.12 +0.2
566,880 - 8598 mRNA_230 0.12 +0.5
566,880 + 8598 mRNA_230 0.12 +0.5
566,885 + 8598 mRNA_230 0.12 +0.8
566,886 + 8598 mRNA_230 0.13 -0.0
566,889 - 8598 mRNA_230 0.13 -0.9
566,894 - 8598 mRNA_230 0.13 +0.4
566,895 + 8598 mRNA_230 0.13 -0.5
566,896 + 8598 mRNA_230 0.13 +0.1
566,912 + 8598 mRNA_230 0.14 -0.1
566,947 - 8598 mRNA_230 0.16 +2.1
566,998 - 8598 mRNA_230 0.19 -0.2
567,051 + 8598 mRNA_230 0.21 -0.4
567,229 - 8598 mRNA_230 0.31 -0.5
567,257 - 8598 mRNA_230 0.33 +1.5
567,285 - 8598 mRNA_230 0.34 +0.1
567,532 + 8598 mRNA_230 0.48 +0.8
567,549 + 8598 mRNA_230 0.49 +0.7
567,957 - 8598 mRNA_230 0.71 +0.2
568,009 - 8598 mRNA_230 0.74 +0.1
568,407 - +1.5
568,655 - +1.2
568,882 + +0.7

Or see this region's nucleotide sequence