Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_248

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8615 and 8616 are separated by 666 nucleotides8616 and 8617 are separated by 175 nucleotides mRNA_247: 8615 - K11254 H4 histone H4, at 602,212 to 602,729 8615 mRNA_248: 8616 - K01796 E5.1.99.4, AMACR, mcr alpha-methylacyl-CoA racemase, at 603,396 to 605,038 8616 mRNA_249: 8617 - K03538 POP4, RPP29 ribonuclease P protein subunit POP4, at 605,214 to 606,480 8617

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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603,322 - +0.2
603,445 + +0.2
603,740 + 8616 mRNA_248 0.21 -1.6
603,945 + 8616 mRNA_248 0.33 -0.0
604,072 + 8616 mRNA_248 0.41 -0.2
604,084 + 8616 mRNA_248 0.42 -0.2
604,349 + 8616 mRNA_248 0.58 +0.9
604,379 - 8616 mRNA_248 0.60 -1.0
604,516 - 8616 mRNA_248 0.68 +0.7
604,521 + 8616 mRNA_248 0.68 +0.7
604,804 - 8616 mRNA_248 0.86 -1.4
604,812 - 8616 mRNA_248 0.86 -0.0
604,817 + 8616 mRNA_248 0.86 +1.2
604,958 + +1.9
605,085 - -0.4
605,089 - -0.1
605,099 + -0.2
605,101 + +0.0
605,110 - +0.0
605,118 + +0.4
605,119 + -1.8
605,137 + +0.1
605,138 + +0.7
605,213 - -0.4

Or see this region's nucleotide sequence