Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_259

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8626 and 8627 are separated by 535 nucleotides8627 and 8628 are separated by 251 nucleotides mRNA_258: 8626 - HMMPfam-Eukaryotic protein of unknown function (DUF1764)-PF08576, at 621,201 to 621,954 8626 mRNA_259: 8627 - HMMPfam-Domain of unknown function (DUF1771)-PF08590,ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103,ProSiteProfiles-Smr domain profile.-PS50828,SMART-zinc finger-SM00356, at 622,490 to 625,658 8627 mRNA_260: 8628 - KOG2534 DNA polymerase IV (family X), at 625,910 to 627,593 8628

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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621,987 - +1.0
622,007 - -1.4
622,143 - +0.2
622,144 - +0.7
622,150 - +0.1
622,153 + +0.5
622,313 - +0.1
622,316 + -0.6
622,423 + +0.5
622,445 + +1.5
622,455 + +0.1
622,715 - -0.6
623,273 + 8627 mRNA_259 0.25 -0.1
623,435 + 8627 mRNA_259 0.30 +1.5
624,180 - 8627 mRNA_259 0.53 -0.5
624,224 + 8627 mRNA_259 0.55 -0.3
625,752 + +0.6
625,771 - -0.2
625,779 - +0.1
625,784 - -0.0
625,785 + +0.4
625,826 - +0.6
625,835 - -0.1
625,835 + +1.7
625,842 - +0.2
625,847 - -0.4
625,847 + +0.7
625,851 - +0.4
625,858 - -0.2
625,858 - -3.1
625,884 + +0.6
626,007 - +1.4
626,579 + 8628 mRNA_260 0.40 -1.1

Or see this region's nucleotide sequence