Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_565

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8932 and 8933 are separated by 110 nucleotides8933 and 8934 are separated by 117 nucleotides8934 and 8935 are separated by 270 nucleotides mRNA_564: 8932 - K01230 MAN1 mannosyl-oligosaccharide alpha-1,2-mannosidase, at 1,351,046 to 1,353,534 8932 mRNA_565: 8933 - K03256 TRM6, GCD10 tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit, at 1,353,645 to 1,355,726 8933 mRNA_566: 8934 - HMMPfam-Oligosaccaryltransferase-PF10215,SUPERFAMILY--SSF103464, at 1,355,844 to 1,356,185 8934 mRNA_567: 8935 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 1,356,456 to 1,359,397 8935

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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1,352,810 - 8932 mRNA_564 0.71 +0.6
1,352,885 - 8932 mRNA_564 0.74 -1.1
1,353,414 + +1.3
1,353,441 - -1.3
1,353,481 + -0.8
1,353,533 - +1.8
1,353,584 - +0.4
1,353,607 + -0.8
1,355,919 + 8934 mRNA_566 0.22 +0.1
1,355,925 + 8934 mRNA_566 0.24 +0.4
1,356,185 + -0.8
1,356,200 + -1.0
1,356,306 + +1.1
1,356,308 - -0.7
1,356,313 - -0.2
1,356,325 - +0.7
1,356,325 - -0.4
1,356,331 + -0.2
1,356,332 + -0.1
1,356,634 - +0.1
1,356,659 - -0.0

Or see this region's nucleotide sequence