Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_636

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9003 and 9004 are separated by 122 nucleotides9004 and 9005 are separated by 108 nucleotides mRNA_635: 9003 - KOG1470 Phosphatidylinositol transfer protein PDR16 and related proteins, at 1,526,583 to 1,528,432 9003 mRNA_636: 9004 - Hypothetical Protein, at 1,528,555 to 1,529,690 9004 mRNA_637: 9005 - K02516 PRMT5, HSL7 type II protein arginine methyltransferase, at 1,529,799 to 1,532,897 9005

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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1,527,950 + 9003 mRNA_635 0.74 -3.6
1,528,088 - 9003 mRNA_635 0.81 +0.9
1,528,358 + +0.1
1,528,367 + -0.3
1,528,368 + -2.9
1,528,481 - -0.0
1,528,492 + +1.7
1,528,498 - -1.1
1,528,502 + +0.2
1,528,517 + -0.4
1,528,643 + -0.1
1,528,779 - 9004 mRNA_636 0.20 +0.6
1,528,782 - 9004 mRNA_636 0.20 +0.4
1,528,807 + 9004 mRNA_636 0.22 +1.1
1,528,820 + 9004 mRNA_636 0.23 +1.7
1,528,955 - 9004 mRNA_636 0.35 +1.1
1,529,549 + 9004 mRNA_636 0.88 -0.2
1,530,063 - -1.7

Or see this region's nucleotide sequence