Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_641

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9008 and 9009 are separated by 122 nucleotides9009 and 9010 are separated by 338 nucleotides mRNA_640: 9008 - HMMPfam-UV radiation resistance protein and autophagy-related subunit 14-PF10186, at 1,536,476 to 1,538,269 9008 mRNA_641: 9009 - K08333 PIK3R4, VPS15 phosphoinositide-3-kinase, regulatory subunit 4, at 1,538,392 to 1,544,328 9009 mRNA_642: 9010 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 1,544,667 to 1,546,033 9010

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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1,537,748 - 9008 mRNA_640 0.71 +0.6
1,538,057 - 9008 mRNA_640 0.88 -1.1
1,538,181 - +0.9
1,538,200 + +2.7
1,538,326 + -0.0
1,538,364 + +1.5
1,538,365 + +0.4
1,538,647 - -0.1
1,538,654 + +0.3
1,539,491 + 9009 mRNA_641 0.19 -1.6
1,539,820 - 9009 mRNA_641 0.24 +0.4
1,540,100 + 9009 mRNA_641 0.29 +1.3
1,541,550 - 9009 mRNA_641 0.53 +1.1
1,541,557 + 9009 mRNA_641 0.53 +0.6
1,541,593 - 9009 mRNA_641 0.54 -0.1
1,541,704 - 9009 mRNA_641 0.56 +0.9
1,541,715 - 9009 mRNA_641 0.56 -0.6
1,541,726 - 9009 mRNA_641 0.56 -2.1
1,541,873 - 9009 mRNA_641 0.59 +0.2
1,542,030 + 9009 mRNA_641 0.61 -0.3
1,542,131 - 9009 mRNA_641 0.63 +1.7
1,542,383 - 9009 mRNA_641 0.67 +2.8
1,542,649 + 9009 mRNA_641 0.72 +0.5
1,543,071 + 9009 mRNA_641 0.79 +0.4
1,543,523 + 9009 mRNA_641 0.86 +0.5
1,543,979 - -0.1
1,544,004 - -0.4
1,544,290 - +0.7
1,544,303 + -0.3
1,544,317 + +0.3
1,544,333 - +0.2
1,544,412 - +1.5
1,544,545 + +0.4
1,544,583 - +0.9
1,544,709 + +0.9

Or see this region's nucleotide sequence