Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_687

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9054 and 9055 are separated by 599 nucleotides9055 and 9056 are separated by 390 nucleotides mRNA_686: 9054 - K06867 K06867 uncharacterized protein, at 1,645,014 to 1,645,916 9054 mRNA_687: 9055 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,646,516 to 1,647,919 9055 mRNA_688: 9056 - Hypothetical Protein, at 1,648,310 to 1,648,900 9056

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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1,645,577 + 9054 mRNA_686 0.62 +0.1
1,645,703 - 9054 mRNA_686 0.76 +0.8
1,645,869 + -2.1
1,645,992 - +1.0
1,645,993 + -0.2
1,645,995 - -0.5
1,645,995 - +0.5
1,646,004 - -1.0
1,646,009 - -0.2
1,646,015 - -0.2
1,646,018 + +0.2
1,646,024 + +1.9
1,646,024 + +1.6
1,646,033 - +1.4
1,646,150 - -0.4
1,646,154 - -1.0
1,646,438 + +0.2
1,646,455 - +0.7
1,646,461 + -0.3
1,646,871 - 9055 mRNA_687 0.25 +0.5
1,646,889 + 9055 mRNA_687 0.27 -0.7
1,647,325 + 9055 mRNA_687 0.58 -0.6
1,647,766 + 9055 mRNA_687 0.89 -0.2
1,647,960 + +0.4
1,648,654 + 9056 mRNA_688 0.58 -0.4
1,648,675 + 9056 mRNA_688 0.62 +0.1
1,648,681 + 9056 mRNA_688 0.63 -0.2

Or see this region's nucleotide sequence