Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_706

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9073 and 9074 are separated by 350 nucleotides9074 and 9075 are separated by 778 nucleotides mRNA_705: 9073 - Hypothetical Protein, at 1,686,882 to 1,687,681 9073 mRNA_706: 9074 - BLAST Myelin gene regulatory factor [Chaetura pelagica], at 1,688,032 to 1,688,891 9074 mRNA_707: 9075 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,689,670 to 1,691,771 9075

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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1,687,107 + 9073 mRNA_705 0.28 -0.5
1,687,249 - 9073 mRNA_705 0.46 -0.2
1,687,254 - 9073 mRNA_705 0.47 +1.9
1,687,385 - 9073 mRNA_705 0.63 -0.8
1,687,521 + 9073 mRNA_705 0.80 +0.4
1,687,550 + 9073 mRNA_705 0.83 +1.3
1,687,719 + +1.5
1,687,813 - +1.2
1,687,951 - +0.6
1,687,960 + -0.7
1,687,967 - -0.2
1,688,101 - +0.1
1,688,102 - +0.4
1,688,117 + +0.2
1,688,265 - 9074 mRNA_706 0.27 +1.4
1,688,381 - 9074 mRNA_706 0.41 -2.0
1,688,548 + 9074 mRNA_706 0.60 +0.3
1,688,706 + 9074 mRNA_706 0.78 -0.8
1,688,802 - 9074 mRNA_706 0.90 +0.8
1,688,981 - +1.0
1,689,101 - -2.1
1,689,109 + -1.0
1,689,131 - +0.1
1,689,145 + -0.4
1,689,283 + -0.1
1,689,408 + -0.2
1,689,558 - -0.4
1,689,584 + +2.5
1,689,602 + +1.8

Or see this region's nucleotide sequence