Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_730

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9097 and 9098 are separated by 457 nucleotides9098 and 9099 are separated by 314 nucleotides mRNA_729: 9097 - BLAST CMGC/DYRK/DYRK2 protein kinase [Microbotryum lychnidi..., at 1,733,800 to 1,738,518 9097 mRNA_730: 9098 - KOG0061 Transporter, ABC superfamily (Breast cancer resistance protein), at 1,738,976 to 1,743,135 9098 mRNA_731: 9099 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,743,450 to 1,746,549 9099

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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1,737,998 + 9097 mRNA_729 0.89 -0.6
1,738,082 - -0.2
1,738,104 + +0.9
1,738,244 - -0.2
1,738,272 - +0.1
1,738,412 - +1.9
1,738,432 + +0.8
1,738,432 - +0.4
1,738,581 + +0.6
1,738,592 + +0.4
1,738,720 + +1.2
1,738,733 + -0.2
1,738,737 - -0.2
1,738,738 - +0.2
1,738,738 - +1.4
1,738,741 + +0.9
1,738,746 + -0.1
1,738,852 - +0.5
1,738,856 + +1.0
1,738,870 - +1.4
1,739,190 - +1.1
1,739,199 + +1.2
1,739,494 + 9098 mRNA_730 0.12 +0.0
1,739,605 + 9098 mRNA_730 0.15 -0.5
1,739,863 - 9098 mRNA_730 0.21 +2.0
1,739,883 - 9098 mRNA_730 0.22 +1.7
1,740,035 - 9098 mRNA_730 0.25 +0.6
1,740,293 + 9098 mRNA_730 0.32 +2.8
1,740,455 - 9098 mRNA_730 0.36 +1.2
1,740,596 + 9098 mRNA_730 0.39 -0.5
1,740,740 - 9098 mRNA_730 0.42 +0.6
1,740,785 - 9098 mRNA_730 0.43 +0.8
1,740,836 + 9098 mRNA_730 0.45 +1.2
1,740,920 - 9098 mRNA_730 0.47 +0.3
1,740,939 - 9098 mRNA_730 0.47 -1.4
1,741,365 - 9098 mRNA_730 0.57 -0.3
1,741,374 + 9098 mRNA_730 0.58 +1.2
1,741,465 + 9098 mRNA_730 0.60 +0.5
1,741,565 - 9098 mRNA_730 0.62 -0.0
1,741,694 - 9098 mRNA_730 0.65 +0.1
1,742,093 + 9098 mRNA_730 0.75 +0.7
1,742,197 - 9098 mRNA_730 0.77 +1.6
1,742,197 - 9098 mRNA_730 0.77 +1.0
1,742,536 + 9098 mRNA_730 0.86 +0.8
1,742,947 + +0.5
1,742,985 - +1.7
1,743,087 + +0.3
1,743,101 + -0.3
1,743,137 + +0.5
1,743,221 - +1.5
1,743,229 - -0.4
1,743,239 + +0.1
1,743,241 + +1.1
1,743,250 - -0.5
1,743,259 + -0.0
1,743,259 + +0.6
1,743,261 - +1.5
1,743,558 - +1.2
1,743,697 + +0.5
1,743,699 - -0.1
1,744,126 - 9099 mRNA_731 0.22 -0.0

Or see this region's nucleotide sequence