Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_924

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9291 and 9292 are separated by 317 nucleotides9292 and 9293 are separated by 282 nucleotides mRNA_923: 9291 - K03446 emrB MFS transporter, DHA2 family, multidrug resistance protein, at 2,202,019 to 2,204,450 9291 mRNA_924: 9292 - KOG0798 Uncharacterized conserved protein, at 2,204,768 to 2,206,248 9292 mRNA_925: 9293 - K10704 UBE2V ubiquitin-conjugating enzyme E2 variant, at 2,206,531 to 2,207,210 9293

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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2,203,778 + 9291 mRNA_923 0.72 +2.3
2,203,780 + 9291 mRNA_923 0.72 +1.1
2,203,782 - 9291 mRNA_923 0.72 +1.0
2,203,784 + 9291 mRNA_923 0.73 +0.3
2,203,792 + 9291 mRNA_923 0.73 -0.6
2,203,841 - 9291 mRNA_923 0.75 -0.4
2,203,928 + 9291 mRNA_923 0.78 +1.6
2,204,089 - 9291 mRNA_923 0.85 -0.9
2,204,099 + 9291 mRNA_923 0.86 +1.1
2,204,102 - 9291 mRNA_923 0.86 -1.1
2,204,176 + 9291 mRNA_923 0.89 +1.8
2,204,178 - 9291 mRNA_923 0.89 +1.0
2,204,290 + +1.0
2,204,323 - +0.7
2,204,371 - +1.4
2,204,371 - -0.4
2,204,371 + -0.4
2,204,398 + -1.0
2,204,409 - +0.9
2,204,424 - -0.1
2,204,495 - +1.0
2,204,542 - -3.8
2,204,604 + -2.7
2,204,640 - -0.3
2,204,644 + +1.9
2,204,649 - -0.2
2,204,674 - +0.5
2,204,679 - -0.1
2,204,682 - -0.5
2,204,685 + +0.1
2,204,686 - -0.7
2,204,737 + +0.2
2,204,737 + -2.3
2,204,886 - +0.7
2,204,990 + 9292 mRNA_924 0.15 +2.2
2,205,017 + 9292 mRNA_924 0.17 +0.0
2,205,022 - 9292 mRNA_924 0.17 +0.8
2,205,115 - 9292 mRNA_924 0.23 +0.7
2,205,210 + 9292 mRNA_924 0.30 +0.7
2,205,476 - 9292 mRNA_924 0.48 +0.2
2,205,507 - 9292 mRNA_924 0.50 -0.3
2,205,550 + 9292 mRNA_924 0.53 +1.3
2,205,642 - 9292 mRNA_924 0.59 -0.3
2,205,769 + 9292 mRNA_924 0.68 -0.0
2,205,893 + 9292 mRNA_924 0.76 -0.5
2,205,923 - 9292 mRNA_924 0.78 +1.7
2,206,064 - 9292 mRNA_924 0.88 -1.1
2,206,295 - +1.1
2,206,327 - +0.5
2,206,516 - -0.3
2,206,650 + 9293 mRNA_925 0.17 +0.7
2,206,805 - 9293 mRNA_925 0.40 -2.2
2,206,928 - 9293 mRNA_925 0.58 +0.1
2,206,941 - 9293 mRNA_925 0.60 -1.4
2,207,211 + +0.1
2,207,237 + -0.7

Or see this region's nucleotide sequence