Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_930

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9298 and 9299 are separated by 237 nucleotides mRNA_930: 9298 - K00861 RFK, FMN1 riboflavin kinase, at 359 to 1,600 9298 mRNA_931: 9299 - K14794 RRP12 ribosomal RNA-processing protein 12, at 1,838 to 6,021 9299

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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1 + -0.1
1 + -0.7
1 + +0.7
1 + +1.0
1 + -0.1
2 + +0.5
2 + -0.7
5 + +0.2
18 + -0.1
30 + +1.2
37 + -0.4
37 + +2.1
41 + +0.5
42 + +0.4
44 + +0.4
49 + +0.5
49 + +2.1
50 + +0.2
54 + +0.9
58 - +1.5
60 - +0.3
60 + +0.8
60 - -0.7
61 - -0.5
61 + -1.6
63 + +1.0
63 + -0.1
63 + -0.4
63 + +2.3
63 + +1.3
63 + +0.0
64 + +0.8
66 - +0.3
66 + -1.8
70 + +0.5
70 + -0.4
70 - +0.5
71 + -1.8
73 + +0.5
75 - -1.6
77 - +0.1
78 + +1.2
78 - -1.5
78 + -1.3
78 + -0.1
78 + -0.3
78 + +0.3
78 + +0.6
78 + +0.2
78 + -0.7
79 + -0.5
81 - +1.4
81 - +3.0
82 + +1.2
85 + +1.3
104 + -0.2
126 + -0.2
126 + -2.5
128 - +1.0
135 + +0.8
142 + +0.2
150 + +1.7
154 + -0.8
157 + +1.4
171 - -1.0
171 + -0.1
172 + +1.4
172 + +0.8
175 - +0.2
176 - +1.0
177 - +1.0
177 - +0.5
191 - +0.3
192 + +1.2
192 + -0.2
192 + +0.4
193 + -1.8
193 + -0.6
193 + -0.0
198 - -1.1
218 + +0.1
225 + -0.5
235 + +1.9
242 + +2.0
263 - -0.5
293 + +0.6
303 + -0.2
333 - -0.6
339 - -2.1
348 + +1.0
349 + -0.8
377 - -0.2
381 - -1.2
469 + -2.7
487 - 9298 mRNA_930 0.10 +0.2
722 + 9298 mRNA_930 0.29 -1.2
1,641 - -0.8
1,656 - -1.0
1,768 - +0.3
1,778 - +0.3
1,794 + +0.2

Or see this region's nucleotide sequence