Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1111

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9478 and 9479 are separated by 232 nucleotides9479 and 9480 are separated by 322 nucleotides mRNA_1110: 9478 - Hypothetical Protein, at 428,517 to 429,913 9478 mRNA_1111: 9479 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 430,146 to 432,940 9479 mRNA_1112: 9480 - Interpro Protein of unknown function (DUF3602) Protein of unknown function (DUF3602) 0, at 433,263 to 434,310 9480

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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429,176 + 9478 mRNA_1110 0.47 -1.0
429,351 + 9478 mRNA_1110 0.60 +0.3
429,527 - 9478 mRNA_1110 0.72 +0.4
429,737 - 9478 mRNA_1110 0.87 -0.3
429,758 - 9478 mRNA_1110 0.89 +0.5
429,919 + +0.8
429,920 - +1.0
430,032 - +2.5
430,035 - +0.8
430,038 + -0.5
430,047 + +1.4
430,047 + -1.8
430,054 + +0.6
430,074 - +1.2
430,226 + -0.4
430,229 - -0.3
430,229 - -1.0
430,344 - +0.9
430,348 - -2.0
430,350 - +0.1
430,351 + -0.2
430,467 - 9479 mRNA_1111 0.11 +0.0
430,485 - 9479 mRNA_1111 0.12 -1.2
430,498 + 9479 mRNA_1111 0.13 -1.1
430,614 + 9479 mRNA_1111 0.17 -0.9
430,655 + 9479 mRNA_1111 0.18 +0.4
430,670 - 9479 mRNA_1111 0.19 +0.1
430,730 + 9479 mRNA_1111 0.21 +0.8
430,812 + 9479 mRNA_1111 0.24 +0.6
430,930 - 9479 mRNA_1111 0.28 +1.0
430,932 - 9479 mRNA_1111 0.28 +0.0
431,643 - 9479 mRNA_1111 0.54 +0.9
431,802 + 9479 mRNA_1111 0.59 +0.3
431,954 - 9479 mRNA_1111 0.65 -0.5
432,231 + 9479 mRNA_1111 0.75 +3.0
432,353 + 9479 mRNA_1111 0.79 -1.2
432,636 - 9479 mRNA_1111 0.89 -1.2
432,689 - +1.6
432,794 + +0.1
432,813 + +1.1
432,948 + +0.7
433,092 - +0.1
433,096 - -0.5
433,252 - +0.0
433,267 + -0.5
433,267 - +1.0
433,381 - 9480 mRNA_1112 0.11 -1.1
433,388 - 9480 mRNA_1112 0.12 +0.2
433,399 + 9480 mRNA_1112 0.13 -0.2
433,401 + 9480 mRNA_1112 0.13 +1.2
433,406 + 9480 mRNA_1112 0.14 +0.7
433,413 + 9480 mRNA_1112 0.14 -1.2
433,492 - 9480 mRNA_1112 0.22 +0.5
433,537 + 9480 mRNA_1112 0.26 -0.2
433,541 - 9480 mRNA_1112 0.27 +0.8
433,687 + 9480 mRNA_1112 0.40 -0.5
433,688 - 9480 mRNA_1112 0.41 +1.3
433,697 + 9480 mRNA_1112 0.41 +0.5
433,705 - 9480 mRNA_1112 0.42 +1.9

Or see this region's nucleotide sequence