Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1219

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9586 and 9587 are separated by 189 nucleotides9587 and 9588 are separated by 589 nucleotides mRNA_1218: 9586 - SUPERFAMILY--SSF52047, at 673,379 to 675,043 9586 mRNA_1219: 9587 - KOG3202 SNARE protein TLG1/Syntaxin 6, at 675,233 to 676,117 9587 mRNA_1220: 9588 - KOG0254 Predicted transporter (major facilitator superfamily), at 676,707 to 679,515 9588

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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674,848 - 9586 mRNA_1218 0.88 +0.1
674,994 - +1.3
676,192 + -0.0
676,343 + -0.9
676,634 - +0.8
676,650 + +0.0
676,651 - -2.2
676,767 + -0.3
676,773 + +0.5
676,787 + +0.6
676,788 + -0.3
676,928 - +0.8

Or see this region's nucleotide sequence