Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1274

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9641 and 9642 are separated by 205 nucleotides9642 and 9643 are separated by 311 nucleotides mRNA_1273: 9641 - BLAST priB [Histoplasma capsulatum H143], at 808,747 to 810,374 9641 mRNA_1274: 9642 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 810,580 to 813,182 9642 mRNA_1275: 9643 - K11426 SMYD SET and MYND domain-containing protein, at 813,494 to 815,725 9643

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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809,782 + 9641 mRNA_1273 0.64 +1.0
810,331 - +0.2
810,350 + -0.7
810,351 - +0.3
810,480 + +0.5
810,515 + +2.1
810,798 - +0.7
810,820 - +0.5
810,918 + 9642 mRNA_1274 0.13 +0.5
810,919 - 9642 mRNA_1274 0.13 +0.0
810,922 + 9642 mRNA_1274 0.13 +1.4
811,122 - 9642 mRNA_1274 0.21 +0.0
811,129 + 9642 mRNA_1274 0.21 +0.9
811,132 - 9642 mRNA_1274 0.21 -1.2
811,202 + 9642 mRNA_1274 0.24 +2.2
811,206 - 9642 mRNA_1274 0.24 +0.7
811,250 - 9642 mRNA_1274 0.26 +1.5
811,488 - 9642 mRNA_1274 0.35 +0.5
811,581 - 9642 mRNA_1274 0.38 +0.8
811,658 - 9642 mRNA_1274 0.41 -0.4
811,687 + 9642 mRNA_1274 0.43 -0.3
811,826 + 9642 mRNA_1274 0.48 -0.4
811,842 + 9642 mRNA_1274 0.48 -0.3
811,949 - 9642 mRNA_1274 0.53 -1.3
811,991 - 9642 mRNA_1274 0.54 +0.9
812,130 - 9642 mRNA_1274 0.60 +0.4
812,140 - 9642 mRNA_1274 0.60 -1.9
812,147 - 9642 mRNA_1274 0.60 +3.0
812,160 - 9642 mRNA_1274 0.61 +0.3
812,160 - 9642 mRNA_1274 0.61 -1.4
812,166 + 9642 mRNA_1274 0.61 +0.0
812,190 - 9642 mRNA_1274 0.62 +3.0
812,579 + 9642 mRNA_1274 0.77 +0.9
812,604 + 9642 mRNA_1274 0.78 -0.6
812,687 - 9642 mRNA_1274 0.81 -1.8
813,176 - +0.4
813,219 - +1.2
813,470 + -0.7
813,618 - +0.1
813,672 + -0.8
813,740 + 9643 mRNA_1275 0.11 +0.8
813,804 + 9643 mRNA_1275 0.14 +2.4
814,057 + 9643 mRNA_1275 0.25 +0.0

Or see this region's nucleotide sequence