Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1294

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9661 and 9662 are separated by 831 nucleotides mRNA_1293: 9661 - Hypothetical Protein, at 850,858 to 851,999 9661 mRNA_1294: 9662 - K20369 ERV29, SURF4 ER-derived vesicles protein, at 852,831 to 853,984 9662

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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851,859 - 9661 mRNA_1293 0.88 -0.2
851,863 - 9661 mRNA_1293 0.88 +0.2
851,882 - 9661 mRNA_1293 0.90 -0.2
851,891 - +1.9
851,897 + -1.4
851,900 + +0.4
851,906 - +0.2
851,914 - +0.9
851,917 + +0.4
852,137 - +0.9
852,277 - +1.0
852,338 - -2.4
852,343 + +0.2
852,353 + -0.1
852,356 + -1.0
852,359 + -1.0
852,362 + +0.5
852,372 + +0.2
852,490 - -0.4
852,492 + +1.3
852,501 - +1.7
852,510 - +2.7
852,637 - +0.5
852,925 - +0.7
853,420 + 9662 mRNA_1294 0.51 -2.6
853,853 + 9662 mRNA_1294 0.89 +0.9
853,988 + +1.5
854,237 - +0.4
854,717 - +0.3

Or see this region's nucleotide sequence