Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1348

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9716 and 9717 are separated by 394 nucleotides mRNA_1348: 9716 - SUPERFAMILY--SSF52047, at 54,968 to 55,797 9716 mRNA_1349: 9717 - K12852 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component, at 56,192 to 59,943 9717

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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54,018 + -0.7
54,024 + -0.3
54,037 - +0.2
54,050 + +0.9
54,059 + +0.6
54,062 - +0.7
54,071 + -0.6
54,192 + +0.4
54,210 + +0.6
54,473 + +1.3
54,480 + +0.2
54,643 - -0.1
54,741 + +1.7
55,054 + 9716 mRNA_1348 0.10 +1.3
55,186 - 9716 mRNA_1348 0.26 +1.8
55,326 + 9716 mRNA_1348 0.43 -0.1
55,347 - 9716 mRNA_1348 0.46 -0.7
55,443 - 9716 mRNA_1348 0.57 +2.4
55,483 + 9716 mRNA_1348 0.62 +0.5
55,624 + 9716 mRNA_1348 0.79 +0.4
55,742 - -1.2
55,768 - +0.0
55,788 + +1.6
55,905 + +0.4
55,919 - +0.3
55,933 + +1.2
55,945 - -0.1
56,014 + +1.1
56,071 + +1.6
56,083 - -0.3
56,126 - -0.4

Or see this region's nucleotide sequence