Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1416

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_1416: 9784 - BLAST amino-acid permease [Pseudozyma hubeiensis SY62], at 224,768 to 225,675 9784

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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223,795 - +0.7
223,807 - -0.0
223,914 - -0.3
223,931 - -0.5
223,944 + -0.2
223,946 + +0.3
223,947 - +2.4
223,956 - +0.7
223,959 + -0.4
223,960 - +1.9
223,965 + -0.4
223,971 - -0.0
223,976 + -0.6
223,979 - +0.2
223,981 + +0.2
223,985 + +0.1
223,992 + -0.1
224,005 + -0.1
224,015 + +0.7
224,015 + +0.3
224,022 + +1.4
224,028 + -2.9
224,029 - +0.0
224,030 + -0.3
224,039 + -0.1
224,042 - +1.1
224,043 + +0.2
224,045 - +0.3
224,047 + +1.2
224,050 + -0.3
224,062 + +0.6
224,076 - +0.1
224,090 + +0.7
224,188 - +0.3
224,195 + +0.6
224,196 - +0.7
224,216 + +0.5
224,221 - +1.1
224,229 + +0.3
224,257 + -0.6
224,280 - +0.3
224,297 - +0.2
224,301 + +0.4
224,303 + -0.2
224,303 + -0.0
224,311 - +0.2
224,321 - -0.1
224,422 - -0.4
224,454 + +1.4
224,464 - +1.7
224,515 + -0.0
224,516 - -0.4
224,518 + -2.6
224,519 + +0.0
224,519 + +0.3
224,521 + -0.1
224,523 + +1.0
224,533 - -0.5
224,535 + +2.1
224,537 + -1.0
224,537 - +0.5
224,538 + +0.5
224,538 - -0.0
224,554 + +3.1
224,555 + +1.1
224,555 + -0.7
224,561 - -2.1
224,564 - +0.4
224,567 + +0.3
224,575 - -1.6
224,575 - -0.1
224,577 - +0.7
224,594 + +0.9
224,620 - +0.6
224,688 - -0.5
224,708 - +0.0
224,713 - -0.0
224,714 - +1.1
224,724 - +0.2
224,736 + +1.0
224,853 + +0.2
224,859 - 9784 mRNA_1416 0.10 -0.5
224,869 + 9784 mRNA_1416 0.11 -0.2
224,880 - 9784 mRNA_1416 0.12 +0.8
225,026 - 9784 mRNA_1416 0.28 -0.0
225,038 + 9784 mRNA_1416 0.30 +0.7
225,300 + 9784 mRNA_1416 0.59 +0.6
226,160 + +0.2
226,185 + -3.5
226,189 - +0.3
226,307 - -1.0

Or see this region's nucleotide sequence